{1}{1}23.976
{20}{70}Previously on Stargate Atlantis
{121}{150}We saw the hive ship blow up.
{151}{218}{Y:i}I assure you Dr McKay that|Major Sheppard is alive and well.
{219}{242}Who is this?
{243}{330}{Y:i}Steven Caldwell. Commander of the Daedalus.|We are ready to assist you.
{345}{418}Rodney we need the shield up|in 40 seconds or we're dead!
{455}{521}With only one functioning ZPM,|we can't expect to hold on that long.
{522}{559}{Y:i}Are we talking months, weeks?
{560}{578}Days.
{579}{623}{Y:i}- What if they thought we were gone?|- Destroy the city you mean?
{624}{660}No, we just make it look like we did.
{661}{696}{Y:i}We fake a self destruct.
{697}{727}Is it working or not?
{730}{763}I think they bought it.
{860}{890}He should be dead.
{891}{964}- I'd like to report for duty ma'am.|- Dr. Beckett released you?
{1014}{1030}That's Ford.
{1031}{1059}I assume that's him in the Jumper?
{1060}{1123}- Shut it down!|- I can't the Jumper's in control!
{1147}{1177}We'll find him.
{1185}{1216}Maybe.
{1815}{1860}Hey, what are you doing up so late?
{1875}{1905}Couldn't sleep.
{1954}{2026}Must be the burden of command.
{2030}{2114}You know, ever since I was promoted to Lt Colonel.
{2158}{2210}Alright John, it's been almost a month.
{2212}{2298}When are you going to stop trying to find|a way to bring that up in every single conversation.
{2299}{2330}You gotta understand.
{2332}{2415}There's a lot of people in the Air Force|who never thought I'd make it past Captain.
{2430}{2528}Well obviously, the people who's|opinions matter the most thought otherwise.
{2663}{2718}What about you? What are you still doing up?
{2762}{2824}I think I got used to fall asleep|to the sound of the ocean.
{2849}{2922}Well McKay say's we're already|at the edge of the Pegasus Galaxy.
{2928}{2990}You'll be fine once we get back to Atlantis.
{3029}{3064}You know it's funny.
{3066}{3177}I spent the past year wondering if I'd ever see|Earth again and as soon as I got there...
{3218}{3259}I know how you feel.
{3262}{3345}God, it was extremely convenient|to be able to step through the gate
{3346}{3465}and be at Stargate Command in an instant|and now this feels extremely inconvenient.
{3466}{3557}Having to spend 18 day's|cooped up in this ship to get back.
{3558}{3662}Until we find another ZPM to power the Earth gate,|that's just the way it's gonna have to be.
{3665}{3757}Dr Weir. Colonel Sheppard. There's been an accident.
{3997}{4045}That's Doctor Monroe. What happened?
{4048}{4088}I don't know.
{4115}{4155}But he's dead.
{4448}{4505}Transcript: Scifigate.net|Subtitles: Team SG-66 - www.seriestele.net
{4651}{4708}Right, one, two, three.
{4763}{4793}Carry on.
{4843}{4874}How did he die?
{4877}{4958}I'm not 100% certain, |but there are burn marks on his fingertips.
{4958}{4998}Season 2 - Episode 2|The Intruder
{5003}{5060}Obviously there was a short.
{5100}{5141}Panels open, circuits are charred.
{5142}{5207}There's not enough juice in those circuits|to kill anyone. Doctor?
{5210}{5284}I'll know more once I've had a chance|to examine the body more thoroughly.
{5332}{5368}Do you know what he was working on?
{5370}{5455}Computer diagnostics. Strictly routine.|I've got security camera footage.
{5845}{5871}What happened there?
{5872}{5906}I don't know. It's a camera malfunction.
{5907}{5987}Right before he was killed? Interesting coincidence.
{5991}{6072}Actually, I think it makes sense.|Look, Colonel Caldwell is right.
{6073}{6159}There's not enough juice in those circuits|to kill someone. At least not normally.
{6160}{6193}What are you thinking?
{6194}{6265}It's possible there was some sort of|isolated power surge in this section.
{6266}{6314}That would explain the lost camera,|the malfunctioning door.
{6315}{6460}So, when the door control didn't respond he took off|the panel to bypass the circuits and received a fatal jolt?
{6462}{6494}Like I said, it's possible.
{6495}{6576}Look, I recommend we drop out of hyperspace,|run a full diagnostic on the power distribution system.
{6577}{6648}No. We drop out now, we risk being detected.
{6650}{6684}That's true. I just think that if we were...
{6686}{6770}We're back in Atlantis in less than two days.|You can do your diagnostic then.
{6789}{6827}Colonel, are you sure that's wise?
{6841}{6903}With all due respect Doctor,|you got back to Earth through the Stargate.
{6905}{6952}This is my third trip on|the Daedalus, between galaxies.
{6954}{7033}I understand that, but this ship is relatively new|and there might be some problems...
{7034}{7125}Doctor! A word please.
{7307}{7390}I know the chain of command can get a little fuzzy|on Atlantis, but that's not gonna happen here.
{7400}{7455}You got a problem with my orders,|you take it to me in private.
{7457}{7508}Otherwise keep your opinions to yourself.
{7513}{7567}Are you sure that's what this is all about?
{7572}{7614}I got a job to do, Doctor.
{7616}{7655}But not the one you wanted.
{7773}{7840}We understand the international community has approved
{7841}{7950}a significant increase in personnel|and resources for the Atlantis mission.
{7953}{8054}Now that we have a ZPM,|the city can support a much larger contingent.
{8062}{8173}Of course, if there's a filling in a corresponding|increase in military presence would also be prudent.
{8183}{8273}I agree. That's why I want|the Major Sheppard to come back with me.
{8275}{8361}In fact I brought all my senior staff back.
{8363}{8450}I think it's only fair that they participate|in the selection process
{8451}{8515}of the new personnel in their respective departments.
{8523}{8582}That's kind of what we wanted to talk to you about.
{8585}{8689}In your report, you single Major Sheppard|out for a lot of credit.
{8695}{8733}That's right.
{8736}{8830}You were also candid enough|to document several occasions
{8831}{8940}in which you and the Major|didn't exactly see eye to eye.
{8942}{9036}In particular, there was an incident|involving an alien nano-virus,
{9038}{9133}in which Major Sheppard directly|disobeyed one of your orders.
{9161}{9231}He also saved a lot of lives that day.
{9275}{9366}Well, the Major's courage and ingenuity|are not in question here.
{9369}{9446}His ability to follow the proper chain of command, is!
{9448}{9485}I'm not military General.
{9487}{9531}But you are the leader of the expedition.
{9532}{9649}You see Doctor, from our point of view, Major Sheppard's|independant nature causes a bit of a problem.
{9653}{9863}If he can disobey you he may see fit to do the same to|the new Commander of the military contingent on Atlantis.
{9870}{9960}Excuse me? And when did this happen?
{9962}{10105}Of course the decision hasn't been made yet.|But we do have a candidate in mind.
{10282}{10351}Atlantis HAS a military Commander.
{10353}{10427}You had a military Commander. Colonel Sumner.
{10457}{10576}When he was killed,|Major Sheppard correctly assumed the position,
{10585}{10652}until a proper replacement could be brought in.
{10660}{10777}Doctor, you can't be suggesting that a mission|of this importance be trusted to a Major.
{10782}{10836}And one with a questionable record, at that.
{10845}{10935}Major Sheppard's record before|he joined my team doesn't concern me.
{10942}{11045}All I can tell you is that if it wasn't for him,|I wouldn't be sitting here right now.
{11068}{11105}And as for his rank.
{11132}{11236}Well, if that's not good enough for you?|You're just gonna have to promote him.
{11247}{11265}Doctor.
{11266}{11315}I shouldn't have to remind you gentlemen,
{11325}{11430}that I continue to have the support|of the President and our foreign allies.
{11459}{11510}You don't wanna fight me on this one.
{11973}{11993}Colonel Caldwell!
{12000}{12025}What is it doctor?
{12026}{12097}Look. I realise that you've already made it clearly that|you're not big on the whole dropping out of hyperspace.
{12099}{12178}Which I understand, given that we're in the middle|of some uncharted section of the Pegasus Galaxy
{12180}{12228}with who knows what waiting for us around the corner.
{12229}{12255}Doctor?
{12257}{12357}Look, I think it's possible that Dr Monroe's death|might not have been an accident.
{12363}{12388}What are you talking about?
{12390}{12466}I checked the power distribution logs against|the time code on the security camera.
{12468}{12557}There was an unexplained spike, but it happened|thirty seconds after the camera went out.
{12559}{12580}So?
{12584}{12670}So that means the malfunction in the door and|the camera were not caused by the same problem.
{12673}{12715}Major Sheppard was right.|There's too much of a coincidence.
{12716}{12762}You mean, Lt.-Col. Sheppard.
{12768}{12843}Right. That's gonna take some getting used to.
{12849}{12890}Is that the only evidence you have?
{12892}{12916}No, something else.
{12917}{13010}It looks like Dr Monroe was in the process|of enabling certain computer security protocols.
{13011}{13085}Designed to... isolate and|shut down corrupted programs.
{13087}{13114}What programs?
{13116}{13167}I don't know, that's just it.|He was killed before he could finish.
{13169}{13249}You're telling me there's a problem with the ship|and someone killed Monroe to cover it up?
{13251}{13354}I know this sounds crazy, but there is definitely|more going on here than random malfunctions.
{13400}{13489}Bridge this is Caldwell.|Drop us out of hyperspace immediately.
{13907}{14001}If I may be so bold. What exactly are we looking for?
{14003}{14064}Any indication that someone's been|tampering with the ships computers.
{14083}{14142}Perhaps you could be more specific.
{14145}{14182}Not really, no.
{14230}{14260}What was that?
{14269}{14299}Nothing.
{14300}{14375}Look, just check the major systems.|Propulsion, navigation, life support.
{14376}{14447}Look for anything out of the ordinary.|Lindstrom and I will check power distribution,
{14448}{14503}see if we can figure out what caused the power spike.
{14512}{14585}- How's it going Rodney?|- It's going to take a while.
{14665}{14712}Don't stare. He hates it when people stare.
{14714}{14786}Am I the only one who thinks it's strange|we're working with an alien?
{14788}{14882}Intergalactic hyperdrive technology|is kind of new to us, so we need his help.
{14901}{14951}Is he supposed to be naked like that?
{14959}{14996}Lindstrom!
{15342}{15492}OK, let's speed this up. You take the logs|and I'm gonna take a look at... junction box!
{15848}{15884}I got nothing. You?
{15889}{15920}Give me a second.
{15935}{15973}{Y:i}Wait a minute.
{15975}{15995}What?
{15998}{16036}I think I got something here.
{16043}{16074}Well what?
{16162}{16207}Coolant leak, we gotta get the hell out of here!
{16282}{16307}Lindstrom!
{16391}{16420}Lindstrom!
{16615}{16645}Lindstrom!
{16657}{16717}Lindstrom! You alright.
{16852}{16923}Yeah, I'm OK. How am I gonna get out of here?
{16926}{17013}I don't know. Just sit tight. We're gonna need|to shut down the leak and vent the room...
{17100}{17120}Rodney!
{17134}{17210}Lindstrom! Lindstrom you reading me?
{17245}{17295}Lindstrom, are you reading me?
{17445}{17485}What the hell are you doing?
{17560}{17643}The airlock is opening! Override the system!
{17646}{17676}Rodney help me!!
{17679}{17701}Lindstrom!
{17730}{17755}Rodney!
{17800}{17820}Lindstrom!
{18015}{18055}Oh my God.
{18393}{18437}I already told you I'm fine.
{18440}{18522}He's right. It appears he didn't inhale|enough toxins to cause any permanent damage.
{18526}{18621}Although, a few more seconds of exposure,|it would have been quite a different story.
{18624}{18650}Thank you Doctor.
{18685}{18765}I assume this time we can definitely|rule out random malfunctions?
{18766}{18842}Lindstrom found something new. He was trying|to tell me what it was when the leak happened.
{18845}{18871}What were you looking for?
{18873}{18951}We were trying to trace the source|of the power spike that killed Dr Monroe.
{18953}{18982}Who else knew what you were doing?
{18983}{19022}A lot of people knew that we were running diagnostics,
{19024}{19086}but no-one knew that we were|in that particular room at that exact moment.
{19098}{19272}Security camera's. If the person who killed Monroe was|able to get into the system to erase evidence,
{19274}{19357}there's no reason he couldn't do the same thing|to keep tabs on the investigation.
{19366}{19415}Assuming it's a he.
{19424}{19489}How many personnel onboard have|the technical skills to do something like this?
{19491}{19575}Everybody. That's what you get for|assembling a team of brilliant scientists.
{19577}{19633}I can't believe it would be one of our own people.
{19636}{19686}Isn't it possible there's an intruder onboard?
{19688}{19782}We used the lifesigns detector|to do a head count. We didn't get any extra signals.
{19800}{19860}Well a hibernating Wraith? They can avoid detection.
{19863}{19980}We've seen that tactic before. Beam in, lay low,|then look for the chance to conduct sabotage.
{19983}{20071}That was on Atlantis. It's been at least|two months since this ship encountered a Wraith.
{20072}{20126}There's no way one of them could have|stowed onboard for that long.
{20128}{20215}He's right. They did a full decontamination sweep|back on Earth. They would have found something.
{20254}{20364}Alright then. As of this moment I want|all civilian personnel confined to their quarters.
{20373}{20393}What?
{20396}{20445}Present company excepted of course.
{20446}{20532}Colonel, with all due respect, some of those people|could be extremely helpful in the investigation.
{20535}{20590}I'm sorry Doctor, but I can't trust any of them
{20591}{20650}for the simple reason that|I didn't have any say in their selections.
{20651}{20705}Somebody else was in charge of that process.
{20813}{20908}Look at this. Four years relief|work in the Sudan and Ethiopia.
{20909}{20980}Graduate studies at John Hopkins and Harvard.
{20982}{21026}Half a dozen research grants.
{21028}{21139}And she also enjoys judo, horseback riding,|origami and something called base jumping.
{21143}{21208}Parachuting from cliffs and tall buildings.
{21210}{21243}Oh! Of course.
{21246}{21278}You said you wanted the best.
{21280}{21353}All of these people are more qualified than I am.|How am I supposed to choose between them?
{21357}{21446}Carson, you're my Chief Surgeon.|No-one is more qualified than you.
{21518}{21638}Well, I've managed to make a short list.
{21647}{21706}I was hoping you'd make the final selections.
{21746}{21784}This is your short list?
{21881}{21941}Did you review the file of a Dr Simon Wallis?
{21944}{22009}Aye. He was also more qualified than I am.
{22010}{22050}Why isn't he on the list?
{22062}{22135}Well, the candidates were required to sign on|for a blank commitment to a one-year term.
{22188}{22274}Doctor Wallis has been given security clearance.|He knows what this is all about.
{22293}{22329}Maybe that's the problem.
{22354}{22384}What do you mean?
{22394}{22423}He hasn't signed.
{22606}{22644}When were you gonna tell me?
{22665}{22756}There's nothing to tell. I mean,|I haven't said yes, but I haven't said no either.
{22772}{22885}You do realise you are not gonna make|the final list of candidates unless you commit!
{22888}{22995}Elizabeth, you know you can't just come back after a year|and expect me to drop everything on two weeks notice.
{22996}{23053}I have responsabilities here,|I have patients, I have a surge.
{23056}{23154}I know, I know, and I would never|diminish the importance of you work.
{23155}{23226}But you have to understand that every single person
{23231}{23291}on this entire expedition|is in the exact same situation.
{23293}{23352}I mean, In fact it's why they were|chosen in the first place.
{23353}{23380}I understand.
{23391}{23461}Look, I just need a little more time.
{23785}{23847}Doctor McKay. You are just in time.
{23851}{23902}For what? What are you looking at?
{23912}{23959}The sabotage we've been searching for.
{23987}{24019}It's a virus.
{24020}{24059}How perceptive of you.
{24069}{24101}Where did you find it?
{24106}{24161}One of the navigational computers.
{24162}{24278}There is evidence of it in communications|and some of the propulsion systems as well.
{24281}{24303}So it's spreading.
{24307}{24366}- Yes, and changing.|- What do you mean?
{24370}{24434}It appears to be rewriting itself as it grows.
{24447}{24541}It is unlike any human-engineered|programme I have ever encountered.
{24597}{24657}Air person, don't be there.
{24683}{24718}What are you doing?
{24723}{24787}I'm just checking something, I'm sure it is impossible.
{24913}{24952}Crap.
{24959}{24988}What did you do?
{25014}{25069}I just ran it through a translation programme.
{25093}{25123}It's Wraith.
{25206}{25260}'Crap' indeed.
{25315}{25359}A Wraith computer virus.
{25360}{25413}It was probably downloaded|during our last little encounter.
{25425}{25488}Well, if it's been there all this time,|why are we just noticing it now?
{25497}{25549}Well, in all likelihood it was|transmitted in a compressed format.
{25552}{25653}It took a while to unfold, to spread|to the point where it could affect our systems.
{25660}{25718}I think it probably happened|during the return flight to Earth.
{25719}{25776}Since then, it's been dormant,|waiting for some kind of a trigger.
{25779}{25806}Like what?
{25816}{25904}Possibly the fact that we're once again|in proximity to Wraith territory?
{25913}{25982}I think it was ultimately designed to|take control of the navigational system,
{25987}{26037}fly the ship right to them.
{26062}{26104}If they get their hands on the Daedalus,
{26114}{26189}they'll not only have access to|the intergalactic hyperdrive technology
{26190}{26252}but they'll have all the navigation|data that'll lead them straight to Earth.
{26261}{26314}That's what they wanted all along.|A new feeding ground.
{26333}{26399}That still doesn't explain who killed|Dr. Monroe and Dr. Lindstrom.
{26400}{26450}That's what I'm trying to tell you. It was the virus.
{26509}{26573}Look, it's an A.I., an artificial intelligence.|It can think for itself,
{26576}{26632}- adapt itself to new situations...|- Protect itself.
{26635}{26654}Exactly.
{26661}{26738}It knew that Lindstrom and Monroe|were gonna expose it, so it got rid of them.
{26747}{26774}Can it take over the whole ship?
{26778}{26879}Not entirely. You have to remember that|there are hundreds of individual computers on board.
{26880}{26962}A lot of them are interconnected so we tend to think|of them as one big machine but that's not really the case.
{26975}{27107}There are dozens of back-ups and redundancies, and some|systems like life support are deliberately isolated.
{27109}{27168}So they can't kill us all by venting the atmosphere?
{27178}{27209}That was the good news.
{27213}{27260}The bad news is some of the more complex systems
{27263}{27362}like navigation and propulsion require a certain|amount of interconnectivity to function properly.
{27376}{27440}In all likelihood, the virus has spread|so far through those systems
{27441}{27506}that to isolate it|will make the ship impossible to fly.
{27536}{27594}Until we figure out how to get rid of it,|we're stuck here.
{27628}{27699}Colonel Caldwell. Sir, we just|began broadcasting a distress call.
{27703}{27724}What are you talking about?
{27727}{27770}It just came on by itself, sir.
{27772}{27802}Shut it down!
{27915}{27954}I'm locked out, sir.
{27959}{28036}It's the virus. That's what I mean|about adapting itself to new situations.
{28044}{28148}It doesn't have enough control yet to fly us to|the Wraith so instead it's calling the Wraith to us.
{28158}{28211}And right now, we are sitting ducks.
{28557}{28585}What are you doing?
{28588}{28644}Theoretically we should be able to|cut power to the long-range transmitter.
{28650}{28711}You won't be able to send messages,|but neither will the virus.
{28715}{28738}Theoretically.
{28739}{28820}Well, it's pretty smart. So far,|whatever we've tried, it's been one step ahead of us.
{28838}{28860}Try it now.
{28934}{29004}It's no good, sir. We're still broadcasting.
{29013}{29062}Alright, that leaves us one choice.
{29066}{29113}We need to do a full system shutdown.
{29117}{29175}We'll wipe everything, reboot, load clean back-ups.
{29181}{29211}Will that really work?
{29218}{29243}Absolutely...
{29253}{29276}I think.
{29277}{29307}How long will it take?
{29312}{29363}Well it's not like the ship's got an on/off button.
{29364}{29414}We need some time to prepare say, an hour, maybe two?
{29423}{29488}Every minute we wait,|we increase our chances of being detected.
{29493}{29541}We need to shut off the transmitter array now.
{29543}{29569}Do you have an idea?
{29585}{29620}As a matter of fact, I do.
{29646}{29672}But you're not gonna like it.
{29857}{29974}{Y:i}Alright, Colonel, we've evacuated all sections|in the vicinity of the array and sealed the bulkheads.
{29979}{30001}Understood.
{30024}{30072}All personnel, prepare for impact...
{30414}{30445}What's our status?
{30478}{30561}Transmitter is offline.|Distress signal has been disabled.
{30570}{30608}Well done, Colonel, return to the ship.
{30619}{30658}With pleasure.
{30873}{30918}Uh, here's a problem.
{30939}{30976}{Y:i}My controls aren't responding.
{30990}{31016}Say again?
{31037}{31087}{Y:i}The Daedalus is behind me.
{31095}{31147}I can't seem to turn around and ...
{31163}{31215}I am however picking up speed.
{31340}{31367}I should have seen this coming!
{31380}{31469}The navigational software in the F-302 is compatible|with our sublight system which would be infected.
{31472}{31518}The virus must have uploaded itself onto the ship.
{31528}{31567}What about the transport beam?
{31572}{31615}That'll work. Those systems are still clean.
{31665}{31692}Do it.
{31724}{31771}John? This is Elizabeth.
{31783}{31848}{Y:i}Rodney seems to think|the virus has taken over your ship,
{31849}{31884}{Y:i}so we're gonna try and beam you out.
{31899}{31941}Acknowledged.
{31947}{31977}Standby.
{32095}{32128}Ah, slight problem.
{32132}{32150}What?
{32160}{32260}The transport beam is tied to an Asgard sensor.|It's what we use to lock onto targets.
{32261}{32279}So?
{32284}{32377}So that particular piece of equipment was|located in the array that we just destroyed.
{32465}{32517}I could key the system to lock onto his radio signal.
{32523}{32576}It's what they used to do on the Prometheus|before they had Asgard sensors.
{32581}{32658}You'd better do it quick, because in about|three minutes he's gonna be out of range.
{32687}{32741}{Y:i}John, we've run into a slight snag.
{32745}{32814}{Y:i}Rodney just has to make a few adjustments|before we can get you out of there.
{32850}{32879}OK.
{32880}{32943}Don't worry. I'm not about to give up on you just yet.
{33186}{33235}Here you go.
{33246}{33272}Thanks.
{33301}{33364}I appreciate you coming here in person, Colonel.
{33376}{33498}Aiden and I were only cousins, but since he didn't|have any brothers or sisters, we became very close.
{33516}{33593}I want you to understand.|As far as I'm concerned he's still alive.
{33621}{33706}Till I see evidence to the contrary,|I intend to keep looking for him.
{33717}{33773}But you can't give me any details.
{33779}{33853}You can't tell me where he was stationed|or how he went missing
{33860}{33915}or what the chances are that I'll ever see him again.
{33926}{33958}I'm sorry.
{33975}{34055}This is exactly why I didn't want|you to speak with Aiden's grandparents.
{34067}{34111}They can't take this kind of thing right now.
{34126}{34230}I'm starting to think that maybe I should just|tell them that he's not coming home.
{34242}{34329}- At least then they would have some closure.|- You know, we're not there yet.
{34367}{34449}You know, Aiden mentioned|you in that taped message he sent.
{34457}{34496}He said you were a good man.
{34516}{34568}That he trusted you with his life.
{34587}{34625}You tell me, Colonel.
{34641}{34693}Was that trust misplaced?
{34729}{34761}- Colonel?|- Colonel?
{34806}{34826}Colonel!
{34874}{34906}{Y:i}John, are you still there?
{34914}{34936}Go ahead.
{34946}{35050}{Y:i}We're gonna use your radio to target the transport beam.|We'll have you out of there in just a minute.
{35067}{35112}Sounds good. So I'm still in range, right?
{35145}{35199}The truth is, it's never|been tested from this distance.
{35228}{35284}Rodney seems to think you'll be okay.
{35296}{35328}Well that's good.
{35340}{35392}I don't wanna leave any parts behind.
{35410}{35465}We're ready. I'm beaming him directly to the bridge.
{36004}{36041}Are you alright?
{36074}{36173}Two arms, ten fingers.|I'll check the rest later.
{36233}{36310}Alright Doctor, I've had enough of this.|I'd like to have my ship back please.
{36310}{36331}Right.
{36629}{36659}Do you mind?
{36677}{36779}This is what I do when I have problems with my laptop.|I turn it off and then I turn it on again.
{36781}{36832}I think this is a little bit|more complicated than that.
{36835}{36924}I'm just saying, that if we're taking a page|from the John Sheppard book of computer repair,
{36925}{36961}we're really desperate.
{36968}{37029}Alright, Colonel! We're ready.
{37036}{37060}{Y:i}Thank you.
{37064}{37143}{Y:i}All personnel, this is Colonel Caldwell.|Prepare for a full system shutdown.
{37235}{37277}Alright Doctor. Go ahead.
{37277}{37302}And...
{37778}{37829}What's all this?
{37903}{37997}Well I figured we won't have|many more chances for a really good dinner.
{38002}{38097}I mean, the food on Atlantis, it's alright,|and some of the Athosian dishes are fantastic, but...
{38100}{38129}Elizabeth.
{38184}{38218}I'm not going.
{38338}{38370}I don't understand.
{38404}{38475}- You're the adventurer, not me.|- But I'm not.
{38484}{38544}I mean at least I wasn't, not before.
{38550}{38643}Look, the first time I stepped|through that gate I was terrified.
{38654}{38711}I knew I wasn't prepared for what I was getting into,
{38738}{38788}- but I took a chance.|- I know.
{38806}{38843}And I'm proud of you for that.
{38854}{38902}- Simon, we...|- There's something else.
{39038}{39081}I met someone.
{39448}{39496}You were gone for a long time, Elizabeth.
{40227}{40266}Engine room, what's our status?
{40267}{40340}All systems are functioning normally.|No sign of the virus.
{40364}{40395}Look's like it worked, Colonel.
{40422}{40479}May I suggest we vacate this system?
{40488}{40550}Our current position may well have been compromised.
{40558}{40582}Can you give me hyperdrive?
{40588}{40640}That will take longer to get back online.
{40644}{40690}I can get you sublight!
{40704}{40748}- Get us out of here, Major.|- Yes, sir.
{41054}{41081}What is it?
{41082}{41113}We're veering offcourse.
{41123}{41168}Navigational controls are not responding.
{41231}{41256}Damn it!
{41271}{41297}Engine room, what's happening?
{41302}{41385}The virus, it's back!|Now it's got full control of sublight navigation.
{41386}{41418}You said all systems were clean.
{41419}{41511}They were. When we did the reboot there was no sign|of the virus. This shouldn't be happening.
{41560}{41649}Sir, we've got another problem. It's our new heading.
{41678}{41725}We're on a collision course with the nearest star.
{41893}{41996}The virus returned almost immediately|after we restarted the system.
{42030}{42105}At the risk of repeating myself,|I thought we said we wiped it out.
{42106}{42141}We did. I must have missed something.
{42141}{42186}And it's gonna crash us into a sun?
{42193}{42216}Not exactly.
{42240}{42440}A more precise calculation of our heading show's|that we will not collide with the star, but rather,|make a close approach near it's coronasphere.
{42441}{42565}The ship will survive,|but the radiation will kill everyone onboard.
{42590}{42655}Why kill everyone if they already|have full navigational control?
{42656}{42741}The virus has access to our database.|It knows our tactics, our tendencies...
{42742}{42815}They know we'll destroy the ship|before we'll let it fall into Wraith hands.
{42850}{42880}Wait a minute!
{42905}{42987}There was a situation similar to this back at|Stargate Command. I remember reading the report.
{42995}{43156}An alien entity took control of the base computer,|so they did a systems shutdown to destroy it.|It survived by uploading itself onto a MALP.
{43157}{43198}OK, we don't have any MALP's.
{43198}{43251}No, we've got a bay full of F-302's.
{43260}{43335}We already know that the virus can upload itself|onto the ships navigational computers.
{43335}{43422}But it could use any one of those ships as a hiding|place while we wiped the Daedalus systems clean.
{43423}{43457}It's the only possible explanation.
{43462}{43482}So?
{43484}{43631}So, we physically pull the memory storage modules|from the 302's, we do another shutdown.|That should do the trick.
{43650}{43734}Contact the bridge.|Tell Caldwell we're on the way to the bay now.
{44175}{44200}It's not working.
{44215}{44250}Let's try another way.
{44460}{44523}It's the virus.|It must know what we're trying to do.
{44524}{44545}How's that possible?
{44546}{44605}It's thinking ahead, anticipating|our move, like in a chess match.
{44606}{44638}I hope you're good at chess.
{44638}{44712}I don't get to play much.|It's tough finding challenging opponents.
{44800}{44830}Bridge, this is Sheppard!
{44830}{44896}{Y:i}Are there any open paths to the 302 bay?
{44908}{45040}That's a negative Colonel. Look's like|the entire section's been sealed off. We're trying|to override it but we're not having any luck.
{45041}{45073}{Y:i}You're gonna have to beam us in.
{45085}{45099}Wait a minute!
{45099}{45223}The transport beam wasn't designed to beam|from one point to another point inside the ship.|We could end up rematerializing half inside a wall.
{45295}{45336}We're just gonna have to take that chance.
{45337}{45389}Right. Of course. Why not.
{45610}{45678}Colonel, we're ready.
{45679}{45762}{Y:i}Standby.|Hermiod says we need to make a few adjustments first.
{45875}{45917}{Y:i}Activating transport beam now!
{46140}{46166}It worked!
{46323}{46348}Oh boy!
{46470}{46504}Sir, the bay doors are opening!
{46504}{46545}Bridge to engine room! Beam them out now!
{46600}{46648}We should really, really be dead right now.
{46648}{46679}I don't feel dead.
{46680}{46756}Colonel Sheppard. Doctor McKay. Can you hear me?
{46756}{46790}{Y:i}Yeah we're reading you.
{46793}{46932}{Y:i}I have raised the fighter bay shield in order|to prevent the atmosphere from escaping. However,
{46932}{46972}the virus has invaded the system
{46972}{47062}{Y:i}and it is only a matter of|time before it gains control.
{47070}{47184}{Y:i}Therefore, I suggest you complete|your task as quickly as possible.
{47775}{47815}{Y:i}Colonel Sheppard, how's it coming?
{47816}{47843}We're getting there!
{47959}{48070}I can no longer prevent the virus|from gaining complete control of the shield.
{48075}{48100}Beam them out.
{48101}{48215}Unfortunately, it appears that I have|lost control of that system as well.
{48216}{48257}{Y:i}Sir, the shield is down.
{48258}{48286}The cargo bay is decompressing.
{48287}{48321}Colonel Sheppard, come in!
{48380}{48416}{Y:i}Colonel Sheppard, do you read me?
{48538}{48576}{Y:i}Colonel Sheppard, do you read?
{48580}{48645}This is Sheppard. We're OK.
{48646}{48730}{Y:i}We managed to get in|the last F-302 before we lost atmosphere.
{48765}{48814}Any chance you could beam us out?
{48818}{48868}Sorry John, we lost the transport beam.
{48869}{48911}{Y:i}You're gonna have to sit still for a while.
{48913}{48985}We pulled all the memory units.|Another shutdown should work.
{48991}{49017}{Y:i}Understood.
{49026}{49041}Sir!
{49044}{49143}Understood. Engine room, this is bridge.|We don't have a lot of time before|we approach lethal radiation levels.
{49144}{49300}Most of the shutdown protocol's are still in place from|our first attempt. This will only take a few minutes.
{49301}{49335}Let's hope we have a few minutes.
{49356}{49514}You know, I've never actually been inside one|of these before today. It's a little, cramped, huh?
{49515}{49610}Just relax Rodney. We're safe for the moment.
{49611}{49802}Right. Quick question though, just out of curiosity.|How much... air, do these things carry?
{49803}{49824}Lots.
{49825}{49977}I'm just saying, because if this doesn't work and|we have to go off to another planet, who knows how long|we could get stuck in here and so it would...
{49978}{50112}You know what Rodney?|You're exactly right. It's a limited supply,|so why don't we conserve it, by you not talking?
{50123}{50143}At all!
{50240}{50304}All hands, this is Colonel Caldwell.|We're gonna give this another shot!
{50304}{50372}{Y:i}We're initiating total systems shutdown now.
{50690}{50724}Reinitialising.
{50894}{50914}Did it work?
{50915}{50972}We will know momentarily.
{50995}{51010}{Y:i}This is Sheppard.
{51011}{51036}What just happened?
{51037}{51050}{Y:i}Standby.
{51050}{51079}We're trying to figure that out.
{51080}{51165}I'm sorry sir.|We had navigation controls for a second,|but we just lost them again.
{51355}{51433}It didn't work.|We're still on course for the coronasphere.
{51510}{51588}This thing is like a damn cockroach.|You just can't kill it!
{51589}{51665}This should have worked!|We've disabled every navigational computer in this bay.
{51666}{51715}There's nowhere else on this ship, the virus can hide.
{51716}{51833}You're right.|There's nowhere on the ship for it to hide,|but we didn't get every computer.
{51862}{51886}What are you talking about?
{51887}{51906}We missed one.
{52320}{52343}What are you doing?
{52354}{52445}It's the last F-302 Rodney.|The one we left behind? It's tracking us.
{52453}{52531}That makes sense, but we can't go after it.|We need help from computers or navigation.
{52531}{52616}I don't need the navigational computer|to fly this thing, besides we're not going far.
{52660}{52780}{Y:i}Engine room, this is Sheppard.|Prepare to initiate another shutdown on my command!
{52781}{52811}John? What are you doing?
{52812}{52874}Getting to the last place the virus can hide.
{52875}{52915}Wait, wait, wait, wait, wait!|I'm nearly done!
{52995}{53080}{Y:i}You'd better make this quick,|Sheppard. Radiation levels are beginning|to rise in the outer hull.
{53083}{53107}Understood.
{53410}{53430}What is that beeping?
{53460}{53535}Something just locked onto us.|Hold on!
{53895}{53967}What happened to intertial dampers?
{53968}{54035}At these speeds you're gonna feel|the tight turns even with the dampers.
{54038}{54067}Now he tells me.
{54365}{54529}I have them on my screens.|The computer controlled ship is preparing to fire.
{54550}{54592}We're just gonna tap on the brakes here.
{54853}{54872}Nice move.
{54880}{54905}Indeed.
{54910}{54959}He's making a break for the coronasphere.
{54960}{55025}Did I mention that we have even less protection|in this ship than we did in the Daedalus?
{55025}{55045}Not really.
{55049}{55080}I didn't think so.
{55193}{55270}Radiation levels in the Colonel's ship|are beginning to rise.
{55285}{55351}Is it just me?|Or is it getting a little hotter in here?
{55351}{55395}Hold on. I almost got him.
{55555}{55575}What happened?
{55585}{55686}They're approaching the coronasphere.|There is too much interference.
{55740}{55829}You see the thing is, I have very fair skin.|I tend to burn very easy.
{55830}{55884}Just a few more seconds.
{56310}{56360}How long can they survive those radiation levels?
{56360}{56430}I believe it has already been too long.
{56500}{56530}John can you read me?
{56590}{56619}{Y:i}Rodney, come in.
{56640}{56794}{Y:i}Daedalus this is Sheppard. Target is destroyed.|I repeat. Target is destroyed. If you try|one more shutdown, I think it might just work.
{56845}{56944}{Y:i}Well done both of you.|You had us a little worried there for a minute.
{56960}{56989}Sorry about that.
{57010}{57036}{Y:i}This is Caldwell.
{57037}{57117}We'll rendez-vous as soon as we've eradicated|the virus once and for all.
{57130}{57170}Roger that, Sheppard out.
{57270}{57371}You did great back there, Rodney.|Wanna take the stick?
{57384}{57403}Really?
{57421}{57436}No.
{58094}{58273}Dr Weir, Dr McKay, Dr Beckett, welcome back.|And Lt Colonel Sheppard. Congratulations.
{58274}{58330}Thank you. Anything happened while we were gone?
{58331}{58375}There has been no sign of the Wraith.
{58375}{58447}It would appear that they continue to believe|that Atlantis has been destroyed.
{58447}{58565}But I understand that your trip|was not so happily uneventful.
{58566}{58599}No, not exactly.
{58600}{58670}My nose is peeling. Do you have moisturiser?
{58671}{58690}Yes Rodney.
{58691}{58710}Well we should get that.
{58711}{58727}Yes Rodney.
{58750}{58795}Any word from your offworld contacts?
{58796}{58932}Well we have received several intelligence reports.|However, as of yet, there is no news of Lt Ford.
{58933}{58980}I'd like to read those reports if you don't mind.
{58980}{59043}I thought you might. I prepared you this copy.
{59043}{59134}Thank you... Ladies.
{59198}{59242}I'm sorry your journey was so difficult.
{59246}{59326}Oh, well we got here. That's what counts.
{59335}{59486}Still, it must have been pleasant to return to Earth.|A chance to reunite with your friends and loved ones.
{59530}{59544}Dr Weir.
{59576}{59615}Dr Weir, I'm glad you're back.
{59630}{59690}We have several reports|with new information on the city.
{59691}{59734}Ever since we installed ZPM,
{59760}{59795}we've made many interesting discoveries.
{59796}{59860}Can this not wait? Dr Weir has only just arrived.
{59861}{59930}- I'm sorry...|- No, it's fine. Really.
{59980}{60010}Let's get back to work.